Publications

Journals Name Authors / Company Date Comment
Advances in Ranking NIPS 09 Workshop Canberra Distance on Ranked Lists. G. Jurman, S. Riccadonna, R. Visintainer, C. Furlanello / FBK August 2009 In press.
BMC Bioinformatics A machine learning pipeline for quantitative phenotype prediction from genotype data. G. Guzzetta, G. Jurman, C. Furlanello / FBK August 2010 eds. S. Agrawal, C. Burges, K. Crammer): 22-27, 2009
Vol. 11 Supp.8:S3, 2010 [IF: 3.43 (09)]
Method enabling detection of single-stranded DNA ligation activity. Pål Nyren / KTH September 2010 Manuscript
BMC Bioinformatics A machine learning pipeline for quantitative phenotype prediction from genotype data. G. Guzzetta, G. Jurman, C. Furlanello / FBK October 2010 ISSN: 1471-2105
11 Supp.8:S3
[IF: 3.03 (10)]
20th Italian Workshop on Neural Nets Introduction to spectral distances in networks. G. Jurman, R. Visintainer, C. Furlanello / FBK November 2010 In press.
Frontiers in Artificial Intelligence andApplicatios An introduction to spectral distances in networks. G. Jurman, R. Visintainer, C. Furlanello / FBK January 2011 Vol. 226, p. 227-234
doi:10.3233/978-1-60750-692-8-227
In Proceedings CIBB 2011 A machine learning pipeline for discriminant pathways identification. A. Barla, G. Jurman, R. Visintainer, M. Squillario, M. Filosi, S. Riccadonna, C. Furlanello / FBK June 30-July 2, 2011 ISBN: 9788890643705.
published on arxive.org Reverse Engineering Gene Networks with ANN: Variability in Network Inference Algorithms. M. Grimaldi, G. Jurman, R. Visintainer / FBK September 2010 Preprint
published on arxive.org Biological network comparison via Ipsen-Mikhailov distance. G. Jurman, S. Riccadonna, R. Visintainer, C. Furlanello / FBK September 2011 arXiv: 1109.0220v1 [q-bio.MN]
Review: Most recent studies concerning polymer brushes as reactive substrates in the field of DNA microarray technology. Michele Vinante, Tugba Bilgic / EPFL 2011 In preparation
Method for real-time detection of rolling circle amplification reaction. Pål Nyren / KTH 2011 In preparation
PLoS One RegnANN: Reverse Engineering Gene Networks using Artificial Neural Networks. M. Grimaldi, R. Visintainer, G. Jurman / FBK December 2011 Vol. 6, issue 12, p. e28646
[IF: 4.41 (10)]
Clinical and Translatinal Oncology Tools for protein-protein interaction network analysis in cancer research. Sanz-Pamplonaona R, Berenguer A, Solé X, Cordero D, Crous-Bou M, Serra-Musach J, Guinó E, Ángel Pujana M, Moreno V. / ICO January 2012 Clin Transl Oncol (2012) 14:3-14.
doi: 10.1007/s12094-012-0755-9
PLoS One Effect of size and heterogeneity of samples on biomarker discovery: synthetic and real data assessment. Barbara Di Camillo;Tiziana Sanavia;Matteo Martini;Giuseppe Jurman;Francesco Sambo;Annalisa Barla;Margherita Squillario;Cesare Furlanello;Gianna Toffolo;Claudio Cobelli / FBK March 2012 Vol. 7, issue 3, p. e32200
PLoS One Algebraic Comparison of Partial Lists in Bioinformatics. G. Jurman G, S. Riccadonna, R. Visintainer, C. Furlanello / FBK May 2012 Vol. 7, issue 5, p. e36540
PLoS One A comparison of MCC and CEN error measures in multi-class prediction. Jurman G, Riccadonna S, Furlanello C. / FBK August 2012 Vol. 7, issue 8, p. e41882
Molecular BioSystems TOFwave: reproducibility in biomarker discovery from time-of-flight mass spectrometry data. Chierici M, Albanese D, Franceschi P, Furlanello C. / FBK August 2012 Mol Biosyst. 2012 Nov;8(11):2845-9.
doi: 10.1039/c2mb25223f.
PLoS One Clinical Value of Prognosis Gene Expression Signatures in Colorectal Cancer: A Systematic Review. Sanz-Pamplona R, Berenguer A, Cordero D, Riccadonna S, Solé X, Crous-Bou M, Guino E, Sanjuan X, Biondo S, Soriano A, Jurman G, Capella G, Furlanello C, Moreno V. / ICO November 2012 Vol. 7, issue 11, p. e48877
Bioinformatics Minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers. Albanese D, Filosi M, Visintaine r R, Riccadonna S, Jurman G, Furlanello C. / FBK December 2012 Bioinformatics. 2013 Feb 1;29(3):407-8.
doi: 10.1093/bioinformatics/bts707
Discovery and validation of new potential biomarkers for early detection of colon cancer Solé X, Crous-Bou M, Cordero D, Olivares D, Guinó E, Sanz-Pamplona R, Rodriguez-Moranta R, Sanjuan X, de Oca J, Salazar R, Moreno V. December 2012 Manuscript

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